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BIOL 111: PRINCIPLES OF BIOLOGY I
Fall 2009
Updated:  November 10, 2009
Course Description and Schedule
Instructor: Dr. Stan Eisen

Lecture topics

Office: 321-3447; FAX 321-4433

e-mail: seisen@cbu.edu

Textbook: Biology with MasteringBiology™ (8th Edition) (MasteringBiology Series) (Hardcover), by Neil A. Campbell (Author), Jane B. Reece (Author)

 

Supplemental text:  Carroll, S.  (2008).  Into The Jungle: Great Adventures in the Search for Evolution (Paperback).  Pearson, Benjamin Cummings.  (I am not endorsing Amazon.com, but here’s the URL so that you can see the cover:  http://www.amazon.com/Into-Jungle-Adventures-Search-Evolution/dp/0321556712/ref=sr_1_1?ie=UTF8&s=books&qid=1250197757&sr=8-1 )

 

Scope of the Course:

BIOL 111 (Principles of Biology I) is the first half of a comprehensive study of contemporary biology, covering cytology, basic chemistry, chemistry of organic chemistry, cellular transport, enzyme kinetics, energy metabolism, cell division, Mendelian, molecular and population genetics, evolution, systematics, and taxonomy of viruses, monerans, protists, fungi, and plants.

Grading protocol:

Grading will be based on the following:

Each student will also write a 1-paragraph summary of their presentation and will hand out copies of the class at least one day in advance.  This oral presentation and matching 1-paragraph summary will count 1/8 towards your final grade;

Each exam, quiz, and oral presentation will be graded on a 4-point grading scale in which:

A = 4 points, for outstanding work, showing sparks of brilliance;
B = 3 points, for good solid work, but perhaps lacking in critical thinking;
C= 2 points, for an adequate answer, but with major omissions or mistakes in content or logic;
D = 1 point, for a barely passing answer; and
F = 0 point, in which you completely missed the point, or left the answer blank. 

I will compute a final numerical average, and will award final grades on the basis of the following:

A = 3.5 to 4.0
B = 2.75 to 3.49
C = 2.00 to 2.74
D = 1.00 to 1.99
F < 1.00

Attendance:

Attendance will be recorded in both lecture and discussion. Any student who misses more than 8 lectures may be withdrawn from the course or given an 'F". Students must be present for exams. I will return all quizzes and exams EXCEPT the final exam.

Classroom Management Details

I assume that you have the intention of learning something when you attend class.  Therefore, I would appreciate it if you would do the following:

  1. Arrive on time.  During quiz and exam dates, I shall close the door to prevent late-comers from disrupting the administration of the quiz/exam;
  2. Mute or turn off your cell phone prior to the beginning of class.  If you don’t, then I reserve the right to answer your phone.  (I promise I’ll be civil.);
  3. Restrict your use of laptop computers to note-taking, or if requested, to access appropriate web sites to acquire information that is directly pertinent to the class.  If you’re more interested in using the computer for inappropriate uses, such as instant-messaging your friends on Facebook during class time, then you don’t have to suck up valuable oxygen that the rest of us can use in the classroom.

Presenter Schedule: 

Date

Chapter

Presenter(s)

9/10

1.  Reverend Darwin’s Detour

Gadson

9/17

2.  Drawing the Line between Monkeys and Kangaroos

Brown, Davis, Farrell

9/24

3. Life Imitates Life

Ballard, Stewart

10/1

4.  Java Man 

Blackstone, McDaniel

10/15

5.  Where the Dragon Laid Her Eggs

Browning, Murphy, Norris

10/29

6.  The Day the Mesozoic Died

Moore, O'Brien, Smith

11/5

7.  Miss Latimer’s Extraordinary Fish 

Hopper, Karawadra, Wilson

11/12

8.  A Sickle-Cell Safari

Fain, Jackson, Sayani

11/19

9.  In Cold Blood:  The Tale of the Icefish

Lewis, Nguyen, Vo

 

Schedule for Fall 2009

 Day

Date

Topic

Relevant chapter in textbook

M

8/24

Introduction to course,
Chronology of selected discoveries
Eukaryote Organization
http://www.cbu.edu/~seisen/SelectedEventsBiologicalSciences.htm

1, 6.  Intro; Cell structure

 W

8/26

Prokaryote Organization

2.  Chemistry 

Th

8/27

Quiz 1;
Cellular Organization

 

 F

8/28

Atoms and Molecules

3.  Water

 M

8/31

Characteristics of Water

4.  Carbon

 W

9/2

Information Literacy session, at the Library, led by Benjamin Head

5.  Macro-molecules

Th

9/3

Quiz 2;  Chemistry of Organic compounds
Evolution as a unifying theme.

BBC – Charles Darwin and the Tree of Life, Part 1
http://www.youtube.com/watch?v=wEDiGpCU9y0

BBC – Charles Darwin and the Tree of Life, Part 2
http://www.youtube.com/watch?v=0xiJvYkXsQs&feature=related

BBC – Charles Darwin and the Tree of Life, Part 3
http://www.youtube.com/watch?v=1AzSbzPXzKY&feature=related

BBC – Charles Darwin and the Tree of Life, Part 4
http://www.youtube.com/watch?v=Q8sF3GZAq-M&feature=related

BBC – Charles Darwin and the Tree of Life, Part 5
http://www.youtube.com/watch?v=Ie1Z6_taowk&feature=related

BBC – Charles Darwin and the Tree of Life, Part 6
http://www.youtube.com/watch?v=Ie1Z6_taowk&feature=related

 F

9/4

Biological Membranes and transport

7.  Membrane

 M

9/7

LABOR DAY – NO CLASS

 W

9/9

Energy and Metabolism

8.  Metabolism

Th

9/10

Quiz 3; 
Chapter 1.  Reverend Darwin’s Detour

 

 F

9/11

Characteristics of Enzymes
http://bioweb.wku.edu/courses/Biol114/enzyme/enzyme1.asp

8, cont’d 

 M

9/14

Cellular Respiration 1: Glycolysis

9.  Respiration

 W

9/16

Cellular Respiration 2: Krebs cycle, electron transport, chemiosmosis

9, cont’d

Th

9/17

Quiz 4;
Chapter 2.  Drawing the Line between Monkeys and Kangaroos

 

 F

9/18

***EXAM 1***

  

 M

9/21

Photosynthesis – Light phase

10.  Photosynthesis

 W

9/23

Photosynthesis – Dark phase

Th

9/24

Quiz 5; 
Chapter 3. Life Imitates Life

 

 F

9/25

Chromosomal Structure

http://www.johnkyrk.com/chromosomestructure.html
http://www.vivo.colostate.edu/hbooks/genetics/medgen/chromo/chromosomes.html

Video clip:
Molecular Biology Visualization of DNA
http://www.youtube.com/watch?v=5UoKYGKxxMI

11.  Cell Communication

 M

9/28

Cell cycle - Mitosis , or:
http://www.le.ac.uk/ge/genie/vgec/he/cellcycle.html

Cell cycle

 W

9/30

Cell cycle - Meiosis , or:
http://www.le.ac.uk/ge/genie/vgec/he/cellcycle.html

13.  Meiosis

Th

10/1

Quiz 6;
Chapter 4.  Java Man 

 

 F

10/2

Mendelian Genetics Laws
http://www.cbu.edu/~seisen/BasicGenetics.htm

14.  Mendel

 M

10/5

Mendelian Genetics Laws, cont’d
http://www.cbu.edu/~seisen/BasicGenetics.htm

An example of codominance.  (?)

 

[]

 

“Hairy ears” or ear tufts is a gene on the y-chromosome:
Radhakant Bajpai holds the Guinness record, you know:
http://video.yahoo.com/watch/3777385/10360990

A description of sickle cell anemia:  etiology, pathology, treatment
http://emedicine.medscape.com/article/205926-overview?src=emed_whatnew_nl_0#growth

 W

10/7

DNA structure
http://www.cbu.edu/~seisen/DNAStructure.htm

Molecular Visualizations of DNA
http://www.youtube.com/watch?v=4PKjF7OumYo

15.  Chromosomes

Th

10/8

DNA Structure, cont’d

 

 F

10/9

DNA replication:
http://www.youtube.com/watch?v=Luw5_z8mIrI&feature=related
http://www.youtube.com/watch?v=Yl754_TtJ_M

DNA Transcription
http://www.youtube.com/watch?v=vJSmZ3DsntU&feature=related

Protein Synthesis: Translation Process
http://www.youtube.com/watch?v=B6O6uRb1D38&feature=related

16.  Molecular basis

 M

10/12

DNA translation & the genetic code
http://users.rcn.com/jkimball.ma.ultranet/BiologyPages/T/Translation.html

Messenger RNA editing:
http://users.rcn.com/jkimball.ma.ultranet/BiologyPages/R/RNA_Editing.html

17.  Gene to protein

 W

10/14

Introns & Exons

  

Th

10/15

Quiz # 7;
Chapter 5.  Where the Dragon Laid Her Eggs

 

 F

10/16

***EXAM 2***

  

WEEK OF OCTOBER 19: FALL BREAK!!

 

 M

10/26

Gene regulation:
http://www.emunix.emich.edu/~rwinning/genetics/eureg.htm

Operon theory:
http://users.rcn.com/jkimball.ma.ultranet/BiologyPages/L/LacOperon.html

Animation of lac Operon function:
http://www.youtube.com/watch?v=oBwtxdI1zvk&NR=1

The tryptophan Operon:
http://www.youtube.com/watch?v=2AnrbcLcrO4

 

18. Gene regulation

 W

10/28

Viruses

19. Viruses

Th

10/29

Quiz 8;
Chapter 6.  The Day the Mesozoic Died

 

 F

10/30

Biotechnology, and Genetic engineering

20. Biotechnology

 M

11/2

Genomes & Their evolution

21. Genomes 

 W

11/4

Genes & Development

 

Th

11/5

Quiz 9;
Chapter 7.  Miss Latimer’s Extraordinary Fish 

 

 F

11/6

Descent with Modification:  Darwinian Evolution

22.  Descent…

 M

11/9

Evolution of Populations:  Population Genetics

23.  Population genetics

 W

11/11

Origin of species

24. Origin

Th

11/12

Quiz 10;
Chapter 8.  A Sickle-Cell Safari

 

 F

11/13

***EXAM 3***

  

 M

11/16

History of life on Earth

25. History…

 W

11/18

Evolution of Primates

 

Th

11/19

Quiz 11;
Chapter 9.  In Cold Blood:  The Tale of the Icefish

 

 F

11/20

Phylogeny and the Tree of Life

26. Phylogeny

 M

11/23

Archaea

27. Bacteria…

 W

11/25

Bacteria

27, cont’d

Th

11/26

Thanksgiving break – No class

 

 F

11/27

Thanksgiving break – No class

  

 M

11/30

Protists I: Some are animal-like

28. Protists

 W

12/2

Protists II: Some are plant- or fungus-like

 

Th

12/3

Quiz 12

 

 F

12/4

***Exam 4***

M

12/7

How plants colonized land

29.  Plants I

 W

12/9

The evolution of seed plants

30. Plants II

Th

12/10

Fungi

31.  Fungi

 F

12/11

Course Review

 

THE FINAL EXAM WILL BE GIVEN DURING FINAL EXAM WEEK